番薯属植物基因组测序最新进展

杨俊1, 范维娟2, 王红霞2, 赵姗姗1, 吴银亮2, 张鹏2,3,*
1中国科学院上海辰山植物科学研究中心/上海辰山植物园上海市资源植物功能基因组学重点实验室, 上海201602; 2中国科学院分子植物科学卓越创新中心/植物生理生态研究所植物分子遗传国家重点实验室, 上海200032; 3中国科学院大学, 北京100049

通信作者:张鹏;E-mail: zhangpeng@sibs.ac.cn

摘 要:

番薯属(Ipomoea Linn.)是旋花科中物种最多的属, 其中多种植物因可作食物和药物来源以及观赏用途而广为栽培, 其中比较常见的植物包括牵牛花、甘薯、空心菜、茑萝等。该属植物既有二倍体也有多倍体。在基因组研究方兴未艾之际, 该属4个物种已有基因组草图, 它们是: 三浅裂野牵牛(I. trifida)、甘薯(I. batatas)、三裂叶薯(I. triloba)和牵牛花(I. nil)。本文简述了这些基因组研究的近况, 旨在为生物信息从业人员和广大致力于旋花科番薯属的科研人员提供最新信息和激励 更多的基因组测序合作计划。

关键词:番薯属; 基因组测序; 组装; 进展

收稿:2017-03-08   修定:2017-04-05

资助:科技部国家国际科技合作专项(2015DFG32370)和国家自然科学基金(31201254和31501353)。

Advances in genome sequencing of Ipomoea plants

YANG Jun1, FAN Wei-Juan2, WANG Hong-Xia2, ZHAO Shan-Shan1, WU Yin-Liang2, ZHANG Peng2,3,*
1Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai Chenshan Botanical Garden, Shanghai 201602, China; 2National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China; 3University of Chinese Academy of Sciences, Beijing 100049, China

Corresponding author: ZHANG Peng; E-mail: zhangpeng@sibs.ac.cn

Abstract:

Ipomoea is the largest genus of the Convolvulaceae family, with many species can be used for food and drug sources and ornamental purposes, including ordinary plants, such as morning glory, sweetpotato, water spinach, cypress vine and so on. In the wave of genome sequencing till nowadays, there are only four species in the genus Ipomoea have draft genome: they are I. trifida, I. batatas, I. triloba and I. nil. The purpose of this mini-review is to provide the latest information for bioinformatics practitioners and researchers or breeders who dedicate themselves to studying the genus Ipomoea, and may encourage more genome sequencing cooperation programs.

Key words: Ipomoea; genome sequencing; assembly; advances

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